Alzheimer's disease (AD) is a neurodegenerative disorder characterized by progressive cognitive decline. Glucagon-like peptide-1 receptor agonists (GLP-1RAs) have shown neuroprotective potential, but the mechanisms underlying these effects remain incompletely understood. This study investigated whether semaglutide, a long-acting GLP-1RA, ameliorates AD-like phenotypes in APP/PS1 mice and explored associated changes in neuroinflammatory signaling and blood-brain barrier (BBB) integrity. Eight-month-old amyloid precursor protein/presenilin 1 (APP/PS1) transgenic mice were treated with semaglutide for 8 weeks. Cognitive performance was evaluated using the Morris water maze (MWM). AD-related neuropathology, neuroinflammation-associated protein markers, BBB integrity-related measures, and microglial ultrastructure were assessed using histological, ultrastructural, and molecular approaches. Fecal microbiota composition was profiled by 16 S rRNA amplicon sequencing. Semaglutide improved cognitive performance in APP/PS1 mice and was associated with attenuation of neuronal loss-related changes, reduced Aβ deposition, and improved synaptic ultrastructure. Semaglutide also reduced the AD-associated upregulation of inflammasome-/pyroptosis-associated proteins (including NLRP3-related and caspase-11-related markers) and TLR4/NF-κB-related inflammatory signaling proteins, accompanied by attenuation of microglial mitochondrial ultrastructural abnormalities. In addition, semaglutide improved markers of BBB integrity (tight junction proteins and brain albumin levels) and increased BBB-related Aβ clearance proteins (LRP-1 and P-gp). Gut microbiota profiling revealed genus-level differences between WT and APP/PS1 mice without significant changes in α- or β-diversity. Semaglutide was associated with improved cognition and attenuation of AD-like pathology and neuroinflammatory signaling in APP/PS1 mice, accompanied by partial preservation of BBB integrity.